|Japan||Shogakukan||July 14, 2007||ISBN 4091403492|
|United States||VIZ Media||June 3, 2008||ISBN 1421522896|
|Singapore||Chuang Yi||July 20, 2010||ISBN 9789814306812|
- Strange Happenings Around Town
- The Astonishing Power of Darkrai!!
- The Battle That Warped Space-Time!!
- Clash of the Three Titanic Forces!!
- A Resounding Prayer for Peace
Differences between the anime and the manga
| This section is incomplete.|
Please feel free to edit this section to add missing information and complete it.
- Baron Alberto's role is expanded somewhat.
- Tonio is Godey's grandson, whereas he was Godey's great-grandson in the anime version.
- Maury, Allegra and Kai have greatly reduced roles.
- Brock and Dawn are with Tonio in his lab when he discovers that Palkia is within Alamos Town.
- Team Rocket isn't using disguises while working as Baron's reporters.
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