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* Dr. Fuji's motivations are different than in the movie. In the manga, he is motivated to clone {{p|Mew}} out of a desire for revenge against an institute he was expelled from.
 
* Dr. Fuji's motivations are different than in the movie. In the manga, he is motivated to clone {{p|Mew}} out of a desire for revenge against an institute he was expelled from.
 
* Dr. Fuji meets {{OBP|Mew|M01}} face-to-face and befriends it, leading to his acquiring one of its eyelashes. It later leaves him when he becomes consumed by his work.
 
* Dr. Fuji meets {{OBP|Mew|M01}} face-to-face and befriends it, leading to his acquiring one of its eyelashes. It later leaves him when he becomes consumed by his work.
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* Dr. Fuji attempts to {{pkmn2|caught|catch}} Mew using a [[Master Ball]] in the manga. No Master Ball is featured at any point in the movie.
 
* {{an|Giovanni}}'s ultimate plan is to have Dr. Fuji mass produce Mewtwo and create an army of mindless living weapons. Fuji begs Mewtwo to destroy the laboratory to prevent this and it does so, causing Fuji's death.
 
* {{an|Giovanni}}'s ultimate plan is to have Dr. Fuji mass produce Mewtwo and create an army of mindless living weapons. Fuji begs Mewtwo to destroy the laboratory to prevent this and it does so, causing Fuji's death.
 
* During Ash's battle with [[Raymond]], the match between [[Ash's Squirtle]] and Raymond's {{p|Machamp}} doesn't occur in the manga. Also, {{AP|Pikachu}} faces off against a different trio of Raymond's Pokémon [[Party|team]], defeating a Machamp instead of a {{p|Pinsir}}.
 
* During Ash's battle with [[Raymond]], the match between [[Ash's Squirtle]] and Raymond's {{p|Machamp}} doesn't occur in the manga. Also, {{AP|Pikachu}} faces off against a different trio of Raymond's Pokémon [[Party|team]], defeating a Machamp instead of a {{p|Pinsir}}.
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