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==Synopsis==
==Synopsis==
{{spoilers}}  
{{spoilers}}  
[[Dr. Fuji]], wanting to find a way to restore life by cloning, goes to [[Guyana]] after finding evidence of a shrine dedicated to {{p|Mew}}, the world's most powerful—but now said to be extinct—Pokémon. {{an|Giovanni}}, the leader of [[Team Rocket]], funds Fuji's research in return for an enhanced living replica of Mew. Finding a Fossil of Mew, Fuji and his team create {{an|Mewtwo}}. A confused Mewtwo asks himself who he is, what he is, and where he came from. Just then, Mewtwo wakes up in a stasis tube in one of Fuji's laboratories, where the scientists study him. Mewtwo breaks out of his test tube; [[Dr. Fuji]] tells Mewtwo that he was made by humans and is a clone, much more powerful than Mew. Mewtwo is angry that the scientists see him more as an end result to their project and less of a sentient being so he destroys the lab and kills all the scientists. Dr. Fuji says to himself that he succeeded in creating the world's most powerful Pokémon before dying at the hands of Mewtwo. Then, Giovanni arrives in his private helicopter and offers to help Mewtwo focus his powers. Mewtwo takes up the offer, and is put in a suit of armor.
[[Dr. Fuji]], wanting to find a way to restore life by cloning, goes to [[Guyana]] after finding evidence of a shrine dedicated to {{p|Mew}}, the world's most powerful—but now said to be extinct—Pokémon. {{an|Giovanni}}, the leader of [[Team Rocket]], funds Fuji's research in return for an enhanced living replica of Mew. Finding a Fossil of Mew, Fuji and his team create {{an|Mewtwo}}. A confused Mewtwo asks himself who he is, what he is, and where he came from. Just then, Mewtwo wakes up in a stasis tube in one of Fuji's laboratories, where the scientists study him. Mewtwo breaks out of his test tube; [[Dr. Fuji]] tells Mewtwo that he was made by humans and is a clone, much more powerful than Mew. Mewtwo is angry that the scientists see him more as an end result to their project and less of a sentient being, so he destroys the lab and kills all of the scientists. Dr. Fuji says to himself that he succeeded in creating the world's most powerful Pokémon before dying at the hands of Mewtwo. Then, Giovanni arrives in his private helicopter and offers to help Mewtwo focus his powers. Mewtwo takes up the offer, and is put in a suit of armor.


Over the next few weeks, Mewtwo does most of Team Rocket's dirty work, capturing wild Pokémon and beating any {{pkmn|Trainer}}s that come into the Gym in [[Viridian City]], including [[Gary Oak]]. When Giovanni tells Mewtwo his own twisted way of controlling Pokémon, Mewtwo angrily blasts away, destroying his armor, and—atop the island he was created on—vows to begin his reign on Earth.
Over the next few weeks, Mewtwo does most of Team Rocket's dirty work, capturing wild Pokémon and beating any {{pkmn|Trainer}}s that come into the Gym in [[Viridian City]], including [[Gary Oak]]. When Giovanni tells Mewtwo his own twisted way of controlling Pokémon, Mewtwo angrily blasts away, destroying his armor, and—atop the island he was created on—vows to begin his reign on Earth.
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Meanwhile, as Team Rocket try to get inside the fortress, the legendary Mew senses something troubling and arrives at New Island, and follows closely behind Team Rocket.
Meanwhile, as Team Rocket try to get inside the fortress, the legendary Mew senses something troubling and arrives at New Island, and follows closely behind Team Rocket.


As they arrive in the dining room, Ash and the gang meet three Pokémon Trainers named [[Neesha]], [[Fergus]], and [[Corey]]. Just then, the mystery woman introduces everybody in the room to her master, who is revealed to be none other than Mewtwo. Fergus insults Mewtwo, who sends him flying; Fergus has his {{p|Gyarados}} attack with {{m|Hyper Beam}}, but Mewtwo easily reflects it. Then, Mewtwo releases the woman from his power, Brock quickly catches her, and it is revealed that the mystery woman is the missing Nurse Joy. Mewtwo tells the Trainers that humans are weak and cruel, and have made all Pokémon their slaves. He also says that Pokémon are no better off, since they choose to associate with humans.
As they arrive in the dining room, Ash and the gang meet three Pokémon Trainers named [[Neesha]], [[Fergus]], and [[Corey]]. Just then, the mystery woman introduces everybody in the room to her master, who is revealed to be none other than Mewtwo. Fergus insults Mewtwo, who sends him flying. Fergus has his {{p|Gyarados}} attack with {{m|Hyper Beam}}, but Mewtwo easily reflects it. Then, Mewtwo releases the woman from his power, Brock quickly catches her, and it is revealed that the mystery woman is the missing Nurse Joy. Mewtwo tells the Trainers that humans are weak and cruel, and have made all Pokémon their slaves. He also says that Pokémon are no better off, since they choose to associate with humans.


As Team Rocket gets into the fortress and make their way into a laboratory, they come across a weird-looking machine, a computer, and several Pokémon sleeping in giant pods. Jessie accidentally sits on the computer controls, which play back a recorded message from Dr. Fuji about the fossilized eyelash of Mew that was created to form Mewtwo. Suddenly, the machine takes a piece of hair from Meowth to create a clone of him. The cloned Pokémon awaken (via Mewtwo) and exit to their master.
As Team Rocket gets into the fortress and make their way into a laboratory, they come across a weird-looking machine, a computer, and several Pokémon sleeping in giant pods. Jessie accidentally sits on the computer controls, which play back a recorded message from Dr. Fuji about the fossilized eyelash of Mew that was used to create Mewtwo. Suddenly, the machine takes a piece of hair from Meowth to create a clone of him. The cloned Pokémon awaken (via Mewtwo) and exit to their master.


Mewtwo leads Ash and the other Trainers into the stadium part of the fortress and suggests that they should battle Pokémon to see who is the strongest, the clones versus the originals. Ash's {{AP|Charizard}}, Corey's {{p|Venusaur}}, and Neesha's {{p|Blastoise}} are no match for Mewtwo's clones, and he then summons his own specialized [[Poké Ball]]s, the Clone Balls and uses them to capture Charizard, Venusaur and Blastoise, claiming them as his prize. Mewtwo then announces that the other Pokémon will be taken to be cloned. The clones will remain safe on the island while Mewtwo's storms destroy the planet. He then sends the Balls after the Pokémon.
Mewtwo leads Ash and the other Trainers into the stadium part of the fortress and suggests that they should battle Pokémon to see who is the strongest, the clones versus the originals. Ash's {{AP|Charizard}}, Corey's {{p|Venusaur}}, and Neesha's {{p|Blastoise}} are no match for Mewtwo's clones. Mewtwo then summons his own specialized [[Poké Ball]]s, the Clone Balls, and uses them to capture Charizard, Venusaur and Blastoise, claiming them as his prize. Mewtwo then announces that the other Pokémon will be taken to be cloned. The clones will remain safe on the island while Mewtwo's storms destroy the planet. He then sends the Balls after the Pokémon.


Immediately, all the Trainers are on the run. Some Pokémon are captured before they realize what's happening, some attempt to outrun the Clone Balls and some attempt to use their attacks to defend themselves. However, it proves to be useless as the Pokémon end up all being captured one by one. Ash realizes that Pokémon that are inside their Poké Balls should be safe from capture and recalls {{AP|Bulbasaur}} and {{AP|Squirtle}}; however, it turns out to be no use, as the Clone Balls instead capture the Poké Balls whole with Bulbasaur and Squirtle still inside. Brock suggests carrying the Pokémon away, but while Misty successfully hides {{TP|Misty|Togepi}} inside her bag, {{TP|Misty|Psyduck}} and {{TP|Brock|Vulpix}} aren't so lucky and are also caught.
Immediately, all the Trainers are on the run. Some Pokémon are captured before they realize what's happening, some attempt to outrun the Clone Balls and some attempt to use their attacks to defend themselves. However, it proves to be useless as the Pokémon end up all being captured one by one. Ash realizes that Pokémon that are inside their Poké Balls should be safe from capture and recalls {{AP|Bulbasaur}} and {{AP|Squirtle}}; however, it turns out to be no use, as the Clone Balls instead capture the Poké Balls whole with Bulbasaur and Squirtle still inside. Brock suggests carrying the Pokémon away, but while Misty successfully hides {{TP|Misty|Togepi}} inside her bag, {{TP|Misty|Psyduck}} and {{TP|Brock|Vulpix}} aren't so lucky and are also caught.


{{AP|Pikachu}} is the only Pokémon still un-captured, and as a result he's now the only target of the Clone Balls. Ash uses his body to block them, giving Pikachu a chance to run. Pikachu heads towards a nearby suspended staircase and uses {{m|ThunderShock}} to take out a few of the Clone Balls. Ash follows him up the staircase. Pikachu is forced to use his ThunderShock every few seconds, which in combination with constantly being on the run, leaves him exhausted. As a result, Pikachu is forced off the staircase while dodging the Balls, falling a long way. Ash jumps off after Pikachu to protect him, but before he can grab his friend, a Clone Ball finally manages to capture Pikachu. Ash grabs the Ball before he falls into the pool of water at the base of the staircase, and loses his grip on it underwater. Ash follows it, out of the pool, and towards the entrance to the laboratory where Team Rocket is.
{{AP|Pikachu}} is the only Pokémon still uncaptured, and as a result he's now the only target of the Clone Balls. Ash uses his body to block them, giving Pikachu a chance to run. Pikachu heads towards a nearby suspended staircase and uses {{m|ThunderShock}} to take out a few of the Clone Balls. Ash follows him up the staircase. Pikachu is forced to use his ThunderShock every few seconds, which in combination with constantly being on the run, leaves him exhausted. As a result, Pikachu is forced off the staircase while dodging the Balls, falling a long way. Ash jumps off after Pikachu to protect him, but before he can grab his friend, a Clone Ball finally manages to capture Pikachu. Ash grabs the Ball before he falls into the pool of water at the base of the staircase, and loses his grip on it underwater. Ash follows it, out of the pool, and towards the entrance to the laboratory where Team Rocket is.


The same machine that cloned Meowth earlier is now processing all of the Clone Balls, and Ash grabs the one Pikachu is in just as the machine does as well. Fighting against the machine's many arms, Ash eventually manages to get the Clone Ball away, destroying the machine in the process. Pikachu is released from the Clone Ball and shakes himself off. Happily, he reunites with Ash, but the clones are now freed from their stasis tubes, prepared to join Mewtwo. The remaining Clone Balls are released from the machine in an explosion, and all open to free the Pokémon inside, including Squirtle and Bulbasaur and their Poké Balls.
The same machine that cloned Meowth earlier is now processing all of the Clone Balls, and Ash grabs the one Pikachu is in just as the machine does as well. Fighting against the machine's many arms, Ash eventually manages to get the Clone Ball away, destroying the machine in the process. Pikachu is released from the Clone Ball and shakes himself off. Happily, he reunites with Ash, but the clones are now freed from their stasis tubes, prepared to join Mewtwo. The remaining Clone Balls are released from the machine in an explosion, and all open to free the Pokémon inside, including Squirtle, Bulbasaur, and their Poké Balls.


Mewtwo releases the other humans and is soon joined by his clone army. Ash emerges from the smoke with his and every Trainer's Pokémon. Ash says they won't let Mewtwo's plan succeed, and he tries to punch Mewtwo, but Mewtwo's forcefield knocks him down. Ash goes in for another punch, but this time Mewtwo sends him flying. Just then, after hearing all the commotion, Mew flies down and creates a giant bubble, which Ash lands on, breaking his fall. The playful Pokémon is soon attacked by its clone; Mewtwo says that clones are far more powerful than the originals, but Mew tells him (via Meowth's translating) that a Pokémon's real strength comes from the heart. Mewtwo disgustedly throws another energy ball at Mew; it dodges it, but the blast hits Ash. With Mewtwo blocking all the Pokémon's special moves, a gigantic battle begins between the Pokémon and their clones.
Mewtwo releases the other humans and is soon joined by his clone army. Ash emerges from the smoke with his and every Trainer's Pokémon. Ash says they won't let Mewtwo's plan succeed, and he tries to punch Mewtwo, but Mewtwo's forcefield knocks him down. Ash goes in for another punch, but this time Mewtwo sends him flying. Just then, after hearing all the commotion, Mew flies down and creates a giant bubble, which Ash lands on, breaking his fall. The playful Pokémon is soon attacked by its clone; Mewtwo says that clones are far more powerful than the originals, but Mew tells him (via Meowth's translating) that a Pokémon's real strength comes from the heart. Mewtwo disgustedly throws another energy ball at Mew; it dodges it, but the blast hits Ash. With Mewtwo blocking all the Pokémon's special moves, a gigantic battle begins between the Pokémon and their clones.
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After witnessing all of this, Mewtwo states that it does not matter who is more powerful, that the clones and originals both have value, and that the circumstances of one's birth is irrelevant: it is what one does with life that determines one's destiny. He also says that it would be best if no one knew about what happened. When Mewtwo flies off, he tells Ash that he will find a place where he and the clones can live in peace. As a result, all the memories of this event are erased from the Trainers' minds.
After witnessing all of this, Mewtwo states that it does not matter who is more powerful, that the clones and originals both have value, and that the circumstances of one's birth is irrelevant: it is what one does with life that determines one's destiny. He also says that it would be best if no one knew about what happened. When Mewtwo flies off, he tells Ash that he will find a place where he and the clones can live in peace. As a result, all the memories of this event are erased from the Trainers' minds.


Ash, Misty, Brock, and everyone else instantly find themselves back at the Pokémon Center with no memory of their adventure on New Island. Nurse Joy is also back, offering shelter from the storm. Going out to the pier, Ash sees a Mew in the clouds as the storm ends and tells Misty and Brock that [[EP001|when his journey began]] he saw a {{an|Ho-Oh|mysterious Pokémon}} and now he believes he just saw another. Misty thinks that Ash was just imagining it, but Brock points out that maybe he wasn't. With that, the three friends prepare to continue their journeys.
Ash, Misty, Brock, and everyone else instantly find themselves back at the Pokémon Center with no memory of their adventure on New Island. Nurse Joy is also back, offering shelter from the storm. Going out to the pier, Ash sees Mew in the clouds as the storm ends and tells Misty and Brock that [[EP001|when his journey began]] he saw a {{an|Ho-Oh|mysterious Pokémon}} and now he believes he just saw another. Misty thinks that Ash was just imagining it, but Brock points out that maybe he wasn't. With that, the three friends prepare to continue their journeys.


Meanwhile, Team Rocket—on the now empty and green New Island—having no clue how they got here, decide to take a vacation as the credits begin to roll.
Meanwhile, Team Rocket—on the now empty and green New Island—having no clue how they got here, decide to take a vacation as the credits begin to roll.
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* Of the Pokémon seen in the movie, only Misty's {{TP|Misty|Togepi}}, Misty's {{TP|Misty|Staryu}}, Jessie's {{TP|Jessie|Arbok}}, and James's {{TP|James|Weezing}}, were not captured and cloned by Mewtwo. Misty hid her {{p|Togepi}} in her bag, while Staryu, Arbok, and Weezing were not released from their Poké Balls during the gathering.
* Of the Pokémon seen in the movie, only Misty's {{TP|Misty|Togepi}}, Misty's {{TP|Misty|Staryu}}, Jessie's {{TP|Jessie|Arbok}}, and James's {{TP|James|Weezing}}, were not captured and cloned by Mewtwo. Misty hid her {{p|Togepi}} in her bag, while Staryu, Arbok, and Weezing were not released from their Poké Balls during the gathering.
** Though Mewtwo owned a cloned Venusaur, Charizard, and Blastoise, they were not the clones of the same Pokémon owned by the Trainers on the island. They were supposedly cloned from Pokémon Mewtwo had previously acquired himself. Despite this, all three of the Trainers' Pokémon were captured by Mewtwo anyway.
** Though Mewtwo owned a cloned Venusaur, Charizard, and Blastoise, they were not the clones of the same Pokémon owned by the Trainers on the island. They were supposedly cloned from Pokémon Mewtwo had previously acquired himself. Despite this, all three of the Trainers' Pokémon were captured by Mewtwo anyway.
* Despite numerous mentions and hints that Charizard, as well as its pre-evolution forms will die if the flame on their tail goes out; both the Charizard clone and Charizardtwo were submerged in liquid with no visible flame while in their incubation chambers.
* Despite numerous mentions and hints that Charizard, as well as its pre-evolution forms, will die if the flame on their tail goes out; both the Charizard clone and Charizardtwo were submerged in liquid with no visible flame while in their incubation chambers.
* Some of the Pokémon on the poster didn't appear in the actual movie itself.
* Some of the Pokémon on the poster didn't appear in the actual movie itself.
* This is the only movie which does not feature Ash on the English cover. However, Pikachu does appear.
* This is the only movie which does not feature Ash on the English cover. However, Pikachu does appear.
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* This is the second time Ash dies and then comes back to life, the first being in ''[[EP023|The Tower of Terror]]''.
* This is the second time Ash dies and then comes back to life, the first being in ''[[EP023|The Tower of Terror]]''.
* This movie and ''[[M12|Arceus and the Jewel of Life]]'' are the only Pokémon movies to feature all of their generation's [[version mascot]]s. {{p|Charizard}}, {{p|Blastoise}}, {{p|Pikachu}}, and {{p|Venusaur}} are all present in this movie, while {{p|Dialga}}, {{p|Palkia}}, and {{p|Giratina}} are present in the twelfth movie.  
* This movie and ''[[M12|Arceus and the Jewel of Life]]'' are the only Pokémon movies to feature all of their generation's [[version mascot]]s. {{p|Charizard}}, {{p|Blastoise}}, {{p|Pikachu}}, and {{p|Venusaur}} are all present in this movie, while {{p|Dialga}}, {{p|Palkia}}, and {{p|Giratina}} are present in the twelfth movie.  
* Besides Corey, Fergus and Neesha a female fourth Trainer takes off from the pier on the back of a Fearow. She is seen flying alongside Fergus and Neesha and their Gyarados and Dewgong respectively; however, she likely never made it to New Island unlike the others.
* Besides Corey, Fergus and Neesha, a female fourth Trainer takes off from the pier on the back of a Fearow. She is seen flying alongside Fergus and Neesha and their Gyarados and Dewgong respectively; however, she likely never made it to New Island unlike the others.
** The female Trainer and her Fearow are often mistaken as a continuity error involving Corey and his Pidgeot.
** The female Trainer and her Fearow are often mistaken as a continuity error involving Corey and his Pidgeot.
** Corey's Pidgeot continues to be shown as a Fearow while traveling to New Island.
** Corey's Pidgeot continues to be shown as a Fearow while traveling to New Island.